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Build test code that leverages coderdata to evaluate linear model prediction of drug response #330

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sgosline opened this issue Mar 5, 2025 · 1 comment
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documentation Improvements or additions to documentation

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@sgosline
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sgosline commented Mar 5, 2025

I'd recommend starting with this code base: https://github.com/PNNL-CompBio/BeatAMLproteomics/blob/main/pybeataml/run_models.ipynb

And extending to work with coderdata. then we can evaluate:
1- cancer blind splits
2- effects of balanced splits
3- ability to predict organoid response

then we can compare with the deep learning models.

@sgosline sgosline added the documentation Improvements or additions to documentation label Apr 24, 2025
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This is filed as a documentation bug for now. We have a notebook for the linear models but need more summary statistics to really showcase the predictive capability across all drugs.

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