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HasCaveat function in WHERE clause causes problems with id generators in mimir-api #13

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lordpretzel opened this issue Aug 4, 2020 · 0 comments
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@lordpretzel
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Note that this is related to Sequence annotation generators in mimir-api. The same example works in mimir-caveat.

SELECT *
FROM (SELECT CaveatIfNull(B) AS B
      FROM r)
WHERE HasCaveat(B)

causes a failure with AnnotateWithSequenceNumber:

Driver stacktrace:
	at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2023)
	at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:1972)
	at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:1971)
	at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
	at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
	at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1971)
	at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:950)
	at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:950)
	at scala.Option.foreach(Option.scala:407)
	at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:950)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2203)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2152)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2141)
	at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
	at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:752)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2093)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2114)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:2133)
	at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:467)
	at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:420)
	at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:47)
	at org.apache.spark.sql.Dataset.collectFromPlan(Dataset.scala:3625)
	at org.apache.spark.sql.Dataset.$anonfun$head$1(Dataset.scala:2695)
	at org.apache.spark.sql.Dataset.$anonfun$withAction$1(Dataset.scala:3616)
	at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$5(SQLExecution.scala:100)
	at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:160)
	at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:87)
	at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:763)
	at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:64)
	at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3614)
	at org.apache.spark.sql.Dataset.head(Dataset.scala:2695)
	at org.apache.spark.sql.Dataset.take(Dataset.scala:2902)
	at org.mimirdb.api.request.Query$.$anonfun$apply$3(Query.scala:255)
	at org.mimirdb.util.TimerUtils.time(TimerUtils.scala:10)
	at org.mimirdb.util.TimerUtils.time$(TimerUtils.scala:7)
	at org.mimirdb.api.request.Query$.time(Query.scala:165)
	at org.mimirdb.util.TimerUtils.logTime(TimerUtils.scala:21)
	at org.mimirdb.util.TimerUtils.logTime$(TimerUtils.scala:15)
	at org.mimirdb.api.request.Query$.logTime(Query.scala:165)
	at org.mimirdb.api.request.Query$.apply(Query.scala:254)
	at org.mimirdb.api.request.QueryTableRequest.handle(Query.scala:81)
	at org.mimirdb.api.MimirVizierServlet.doPost(MimirAPI.scala:198)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
	at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:865)
	at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:535)
	at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:255)
	at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
	at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:255)
	at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
	at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:203)
	at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
	at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
	at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:201)
	at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
	at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:144)
	at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
	at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
	at org.eclipse.jetty.server.Server.handle(Server.java:531)
	at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:352)
	at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:260)
	at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:281)
	at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
	at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:118)
	at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:333)
	at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:310)
	at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:168)
	at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:126)
	at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:366)
	at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:760)
	at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:678)
	at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.spark.SparkException: Failed to execute user defined function(AnnotateWithSequenceNumber$$$Lambda$3511/291227351: (int) => bigint)
	at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
	at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
	at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$1.hasNext(WholeStageCodegenExec.scala:729)
	at scala.collection.Iterator$SliceIterator.hasNext(Iterator.scala:266)
	at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:458)
	at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:132)
	at org.apache.spark.shuffle.ShuffleWriteProcessor.write(ShuffleWriteProcessor.scala:59)
	at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
	at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:52)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:444)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:447)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	... 1 common frames omitted
Caused by: java.util.NoSuchElementException: key not found: 0
	at scala.collection.immutable.Map$EmptyMap$.apply(Map.scala:101)
	at scala.collection.immutable.Map$EmptyMap$.apply(Map.scala:99)
	at org.mimirdb.rowids.AnnotateWithSequenceNumber$.$anonfun$apply$2(AnnotateWithSequenceNumber.scala:164)
	at scala.runtime.java8.JFunction1$mcJI$sp.apply(JFunction1$mcJI$sp.java:23)
	... 16 common frames omitted
@lordpretzel lordpretzel added the bug Something isn't working label Aug 4, 2020
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