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mate_queries.py
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'''
Queries for all the relation types.
'''
# Third party imports
import string
# Local imports
# - N/A
def get_alphabet(number):
d = dict(enumerate(string.ascii_lowercase, 1))
return d[number]
def build_grandparent_query(level, offspring_id):
return_string = '''
SELECT gid FROM offsprings off WHERE off.offspring_id='{0}'
'''.format(offspring_id)
for i in range(level):
return_string = '''
SELECT gid FROM offsprings {0} WHERE {0}.offspring_id IN
(
{1}
)
'''.format(get_alphabet(i + 1), return_string)
return return_string
def build_cousin_query(level, grandparents_query):
return_string = '''
SELECT offspring_id FROM offsprings grand WHERE grand.gid IN ({0})
'''.format(grandparents_query)
for i in range(level):
return_string = '''
SELECT offspring_id FROM offsprings {0} WHERE {0}.gid IN
(
{1}
)
'''.format(get_alphabet(i + 1), return_string)
return return_string
def build_removed_cousin_query(offspring_id, level=1):
# TODO: Review this query implementation.
left_parent_query = build_grandparent_query(level, offspring_id)
right_parent_query = build_grandparent_query(level + 1, offspring_id)
return '''
SELECT offspring_id FROM offsprings grand WHERE grand.gid IN ({0})
AND grand.gid IN ({1})
'''.format(left_parent_query, right_parent_query)
def build_query(gid, sex):
parent_label = 'sire' if sex == 'M' else 'dam'
return {
'grand_children': '''
SELECT offspring_id FROM offsprings a
LEFT JOIN gorilla b ON a.offspring_id = b.gid
WHERE a.gid IN (
SELECT offspring_id FROM offsprings c
LEFT JOIN gorilla d ON c.offspring_id = d.gid
WHERE c.gid='{0}' AND d.sex='{1}'
) AND b.sex='{1}'
'''.format(gid, sex),
'grand_parents': '''
SELECT {0} FROM gorilla a WHERE a.gid=(
SELECT {0} FROM gorilla b WHERE b.gid='{1}'
)
'''.format(parent_label, gid),
'aunts_uncles': '''
SELECT sibling_id FROM siblings a
LEFT JOIN gorilla c ON (a.sibling_id = c.gid OR a.gid = c.gid)
WHERE (
a.gid=(
SELECT sire FROM gorilla WHERE gid='{0}'
) OR a.gid=(
SELECT dam FROM gorilla WHERE gid='{0}'
)
) AND (c.sex='{1}')
'''.format(gid, sex),
'nephews': '''
SELECT offspring_id FROM offsprings b
LEFT JOIN gorilla c ON b.offspring_id = c.gid
WHERE b.gid IN (
SELECT sibling_id FROM siblings a WHERE a.gid='{0}'
) AND c.sex='{1}'
'''.format(gid, sex),
'half_siblings': '''
SELECT sibling_id FROM siblings a
LEFT JOIN gorilla c ON a.sibling_id = c.gid
WHERE a.gid='{0}' AND (
c.sire <> (
SELECT sire FROM gorilla WHERE gid='{0}'
) OR c.dam <> (
SELECT dam FROM gorilla WHERE gid='{0}'
)
) AND c.sex='{1}'
'''.format(gid, sex)
}