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bracs.csv #3

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bravePinocchio opened this issue Dec 11, 2024 · 3 comments
Open

bracs.csv #3

bravePinocchio opened this issue Dec 11, 2024 · 3 comments

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@bravePinocchio
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Can you upload your bracs.csv? I would like to know the categorization details about these WSIs.

@invoker-LL
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invoker-LL commented Dec 11, 2024

See https://github.com/invoker-LL/Long-MIL/blob/457b1cf6e33a05b3c8359e1fe98114cd8241f772/bracs.csv,
with label_dict={'PB': 0, 'UDH': 0, 'N': 0, 'ADH': 1, 'FEA': 1, DCIS': 2, 'IC': 2}, for 3-categories classification.

@bravePinocchio
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Thanks. I am working with the bracs dataset and the stats show an average of about 3000 patches per WSI. I would also like to know your number of patches and detailed segmentation parameter settings so that i can reproduce your experiment correctly.

@invoker-LL
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Thanks. I am working with the bracs dataset and the stats show an average of about 3000 patches per WSI. I would also like to know your number of patches and detailed segmentation parameter settings so that i can reproduce your experiment correctly.

The average number is also around 3000 in our implementation (where we use the default preprocessing in 20x magnification
with 224 patch-size via CLAM).
image

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