pyproject.toml

[build-system]
requires = ["hatchling", "pybind11"]
build-backend = "hatchling.build"

[project]
name = "te-toolbox"
version = "0.1.0"
authors = [{ name = "Max Mynter" }]
description = "A paper from my M.Sc. thesis about the problems of Transfer Entropy from discretized continuous time series."
readme = "README.md"
requires-python = ">=3.10, <3.13"
dependencies = ["numpy"]

[project.optional-dependencies]
dev = ["pytest", "pytest-cov", "hypothesis", "ruff", "numpy-typing", "mypy"]
legacy-tests = ["scipy", "scikit-learn", "pandas"]
analysis = ["polars", "matplotlib","seaborn", "joblib", "networkx"]

[tool.pytest.ini_options]
testpaths = ["tests"]
pythonpath = [".", "src"]
markers = ["legacy: tests that check legacy implementation consistency"]
addopts = "-m 'not legacy'"

[tool.ruff]
line-length = 88
indent-width = 4
target-version = "py310"
show-fixes = true
exclude = ["tests/legacy_implementation/thesis_package.py"]

[tool.ruff.lint]
select = [
    "E",
    "F",
    "I",
    "B",
    "W",
    "C90",
    "N",
    "D",
    "UP",
    "PL",
    "RUF",
    "C4",
    "SIM",
    "TCH",
]
ignore = ["D203", "D211", "D212", "D213"]

[tool.hatch.build]
packages = ["src/te_toolbox"]

[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false
check_untyped_defs = true
plugins = "numpy.typing.mypy_plugin"
follow_imports = "silent"