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Still getting a version 111 database error #60

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mehlu22 opened this issue Apr 10, 2025 · 0 comments
Open

Still getting a version 111 database error #60

mehlu22 opened this issue Apr 10, 2025 · 0 comments

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@mehlu22
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mehlu22 commented Apr 10, 2025

Traceback (most recent call last):
File "/home/msaifude/.conda/envs/pvactools/bin/agfusion", line 5, in
cli.main()
File "/home/msaifude/.conda/envs/pvactools/lib/python3.8/site-packages/agfusion/cli.py", line 588, in main
pyensembl_data = pyensembl.EnsemblRelease(release, species)
File "/home/msaifude/.conda/envs/pvactools/lib/python3.8/site-packages/pyensembl/ensembl_release.py", line 76, in init
self.gtf_url = make_gtf_url(
File "/home/msaifude/.conda/envs/pvactools/lib/python3.8/site-packages/pyensembl/ensembl_url_templates.py", line 70, in make_gtf_url
normalize_release_properties(ensembl_release, species)
File "/home/msaifude/.conda/envs/pvactools/lib/python3.8/site-packages/pyensembl/ensembl_url_templates.py", line 43, in normalize_release_properties
reference_name = species.which_reference(ensembl_release)
File "/home/msaifude/.conda/envs/pvactools/lib/python3.8/site-packages/pyensembl/species.py", line 101, in which_reference
raise ValueError("No genome for %s in Ensembl release %d" % (
ValueError: No genome for homo_sapiens in Ensembl release 111

i tried the --release flag 95 but it still installs 111

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