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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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<title>Slavov Lab | Links to databases and scientific societies</title>
<meta name="description" content="Developing and applying single cell proteomics by mass-spec to understand ribosome specialization and its role in cell growth and differentiation" />
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<a href="http://slavovlab.net" title="Slavov lab | Quantitative Systems Biology" rel="home" target="_blank" >
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<div class="header_title" "><!-- style="font-family: 'Josefin Slab', serif; letter-spacing: 0.7px; line-height:35px; font-size:30px; -->
<a href="http://alum.mit.edu/www/nslavov/" title="Slavov Lab | Quantitative Systems Biology" rel="home">Slavov Laboratory | Quantitative Biology</a>
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<div class="header_subtitle1" style="font-size:18px; line-height:30px; ">
Seeking principles
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<div class="header_subtitle2">
in the coordination among protein synthesis, metabolism, cell growth and differentiation
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<a href="index.html" >Home</a> |
<a href="publications.htm">Publications</a> |
<a href="research.htm" >Research</a> |
<a href="people.htm">People</a> |
<a href="data_webs.htm">Data</a> |
<a href="Talks.htm" >Talks</a> |
<a href="Links.htm" id="active">Links</a> |
<a href="https://web.northeastern.edu/slavovlab/blog/" target="_blank" >Blog</a>
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<h2 class="HeadingStyle" id="Protocols">Navigation</h2>
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<div ><br>
<!-- ============ Page Heading ============== , issue 3
<h1 class="HeadingStyle" >Publication Type</h1> -->
<table><tr><td Class="Navigation_Links" >
<ul type="circle" >
<li> <a href="#Protocols" >Protocols</a>
<li> <a href="#Databases" >Databases</a>
<li> <a href="#Analysis" >Analysis Tools</a>
<li> <a href="#Visualisation" >Visualization Tools</a>
<li> <a href="#Places" >Places</a>
</ul>
</td><td>
<ul type="none">
<!-- <li> <a href="http://scholar.google.com/citations?user=GJTMsxIAAAAJ&hl=en" target="_blank" >Google Scholar</a>
<li> <a href="http://www.ncbi.nlm.nih.gov/pubmed?term=Slavov+Nikolai[Author]" target="_blank" >PubMed</a>
<li> <a href="http://biorxiv.org/search/Nikolai%252BSlavov" target="_blank" >bioRxiv</a>
<li> <a href="http://arxiv.org/a/slavov_n_1" target="_blank" >arXiv</a> -->
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<tr>
<td class="MenuColTD" align="center"><br>
<h2 class="HeadingStyle" id="Protocols">Protocols</h2>
</td>
<td> <div class="Content" style="line-height: 180%" ><br>
<!--<a href="http://singlemoleculefish.com/protocols.html" target="_blank" >FISH</a> <br> -->
<a href="Slavov-Lab-Publications/Protocols/glucose_limit.pdf" target="_blank" >Glucose-Limited Medium</a> <br>
<a href="Slavov-Lab-Publications/Protocols/ethanol_limit_ethanol_cs.pdf" target="_blank" >Ethanol-Limited Medium</a> <br>
<a href="Slavov-Lab-Publications/Protocols/phosphate_limit_ethanol_cs.pdf" target="_blank" >Phosphate-Limited Medium with Ethanol as a Sole Source of Carbon and Energy</a> <br>
<a href="Slavov-Lab-Publications/Protocols/nitrogen_limit_ethanol_cs.pdf" target="_blank" >Nitrogen-Limited Medium with Ethanol as a Sole Source of Carbon and Energy</a> <br>
<a href="http://genomics-pubs.princeton.edu/grr/Experimental_Design.html" target="_blank" >Media Characterization</a> <br>
<a href="Slavov-Lab-Publications/Protocols/stress_resistance.pdf" target="_blank" >Measuring heat and oxidative stress resistance of yeast cells</a> <br>
<a href="Slavov-Lab-Publications/Protocols/Methanol_Chloroform_Protein_Purification.pdf" target="_blank" >Methanol-Chloroform Purification of Proteins</a> <br>
<br>
</div>
</td>
<tr>
<td class="MenuColTD" align="center"><br>
<h2 class="HeadingStyle" id="Databases">Databases</h2>
</td>
<td> <div class="Content" style="line-height: 180%"><br>
<a href="http://www.yeastgenome.org/" target="_blank" >SGD</a> ::
<a href="http://pathway.yeastgenome.org/YEAST/class-instances?object=Pathways" target="_blank" >Pathways</a>
<br>
<a href="http://openwetware.org/wiki/bioNumbers" target="_blank" >BioNumbers</a> ::
<a href="Slavov-Lab-Publications/Protocols/KeyNumbers.pdf" target="_blank" >Key numbers</a>
<br>
<a href="http://genome.ucsc.edu/" target="_blank" >UCSC Browser</a> |
<a href="https://main.g2.bx.psu.edu/" target="_blank" >Galaxy</a> |
<a href="http://galaxyp.org/" target="_blank" >GalaxyP</a> |
<a href="http://gio.sbcs.qmul.ac.uk/" target="_blank" >GIO</a> |
<a href="http://www.informatics.jax.org/" target="_blank" >Mouse DB</a> |
<a href="http://www.reactome.org/PathwayBrowser/" target="_blank" >Reactome</a> |
<a href="https://massive.ucsd.edu/" target="_blank" >MassIVE</a>
<br>
<!--
<a href="http://portal.ncibi.org/gateway/" target="_blank" >NCBI</a> ::
<a href="http://nci.nih.gov/" target="_blank" >NCI</a> ::
<a href="http://discover.nci.nih.gov/" target="_blank" >Discover</a> ::
<a href="http://discover.nci.nih.gov/cellminer/" target="_blank" >Cellminer</a> ::
<a href="https://tcga-data.nci.nih.gov/tcga/" target="_blank" >TCGA</a>
<br>
<a href="http://www.broadinstitute.org/software/cprg/" target="_blank" >Broad</a> ::
<a href="http://www.broadinstitute.org/gsea/login.jsp" target="_blank" >GSEA</a> ::
<a href="http://www.broadinstitute.org/cmap/index.jsp" target="_blank" >Connectivity Map</a> ::
<a href="http://www.broadinstitute.org/software/cprg/" target="_blank" >CCLE</a>
<br> -->
<a href="http://www.cellsignal.com/pathways/index.html" target="_blank" >Signaling</a> |
<a href="http://www.phosphogrid.org/" target="_blank" >phosphogrid</a> |
<a href="http://www.cellsignal.com/reference/kinase/kinome.html" target="_blank" >Kinases</a> |
<a href="http://www.moseslab.csb.utoronto.ca/KID/" target="_blank" >PhosphoSite</a> |
<a href="http://www.phosphosite.org/" target="_blank" >Kinases DB</a> |
<a href="http://www.phosida.com/" target="_blank" >phosida</a> |
<a href="http://gps.biocuckoo.org/links.php#l1" target="_blank" >Phospho DBs</a> |
<a href="http://www.genecards.org/" target="_blank" >Maps</a> |
<a href="http://netphorest.info/" target="_blank" >NetPhorest</a> |
<a href="http://elm.eu.org" target="_blank" >ELM</a> |
<a href="http://networkin.info/search.php" target="_blank" >NetworKIN</a> |
<a href="http://www.phosphosite.org/homeAction.do" target="_blank" >PhosphoSitePlus</a> |
<a href="http://llama.mshri.on.ca/selphi/ " target="_blank" >SELPHI</a> |
<a href="http://www.cbioportal.org/" target="_blank" >cBioPortal</a>
</div>
</td>
<tr>
<td class="MenuColTD" align="center"><br>
<h2 class="HeadingStyle" id="Analysis">Analysis <br>Tools</h2>
</td>
<td> <div class="Content" style="line-height: 180%" ><br>
<a href="http://go.princeton.edu/cgi-bin/GOTermFinder" target="_blank" >GO Term Finder</a> |
<a href="http://david.abcc.ncifcrf.gov/summary.jsp" target="_blank" >DAVID</a> |
<a href="http://www.biomart.org/" target="_blank" >BioMart</a> |
<a href="http://servers.binf.ku.dk/asap/" target="_blank" >Asap</a> |
<a href="http://impala.molgen.mpg.de/" target="_blank" >IMPaLA</a> |
<a href="http://cbl-gorilla.cs.technion.ac.il/" target="_blank" >GOrilla </a> |
<a href="http://lrpath.ncibi.org/" target="_blank" >LRpath</a> |
<a href="http://www.broadinstitute.org/gsea/msigdb/annotate.jsp" target="_blank" >GSEA</a> |
<!-- <a href="https://iget.c2b2.columbia.edu/" target="_blank" >iGET</a> | <br> -->
<a href="http://cvxr.com/" target="_blank" >CVX</a> |
<a href="http://tcoffee.crg.cat/apps/tcoffee/index.html" target="_blank" >Tcoffee</a> |
<a href="http://pepcalc.com/ppc.php" target="_blank" >PepCalc</a> |
<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome" target="_blank" >BLASTp</a> |
<a href="http://www.ebi.ac.uk/Tools/st/emboss_transeq/" target="_blank" >EMBOSS Transeq</a> |
</div>
</td>
<tr>
<td class="MenuColTD" align="center"><br>
<h2 class="HeadingStyle" id="Visualisation">Visualization Tools</h2>
</td>
<td> <div class="Content" style="line-height: 180%" ><br>
<a href="http://www.latex-project.org/" target="_blank" >LaTex</a> |
<a href="http://www.xm1math.net/texmaker/index.html" target="_blank" >Texmaker</a> |
<a href="https://www.overleaf.com/" target="_blank" >Overleaf</a> |
<a href="https://www.authorea.com/users/68991" target="_blank" >Authorea</a>
<br>
<a href="http://jtreeview.sourceforge.net/" target="_blank" >JTV</a> |
<a href="http://gephi.org/" target="_blank" >Gephi</a> |
<a href="http://rsbweb.nih.gov/ij/" target="_blank" >ImageJ</a> |
<a href="https://www.desmos.com/calculator" target="_blank" >Calc</a> |
<a href="http://asymptote.sourceforge.net/" target="_blank" >Asymptote</a> |
<a href="http://worrydream.com/Tangle/" target="_blank" >Tangle</a> |
<a href="http://d3js.org/" target="_blank" >D3</a> |
<!--<a href="http://boxplot.tyerslab.com/" target="_blank" >BoxPlotR</a> | -->
<a href="https://code.google.com/p/rpublisher/" target="_blank" >rpublisher</a> |
<a href="https://plot.ly/javascript/" target="_blank" >plotly</a> |
<!--http://wordpress.org/-->
<!--<a href="https://wikimediafoundation.org/wiki/Support_Wikipedia/en" target="_blank" >
<img border="0" alt="Support Wikipedia" src="//upload.wikimedia.org/wikipedia/commons/c/c5/Fundraising_2009-micro-writer-en.png" /></a> -->
</div>
</td>
<tr>
<td class="MenuColTD" align="center"><br>
<h2 class="HeadingStyle" id="Places">Places</h2>
</td>
<td> <div class="Content" style="line-height: 180%" ><br>
<strong class="Bold2">Northeastern University</strong> ::
<a href="http://www.bioe.neu.edu/" target="_blank" >Northeastern Bioengineering</a> ::
<a href="http://www.bioe.neu.edu/people/slavov-nikolai" target="_blank" >Faculty Profile</a> <br>
<strong class="Bold2">Northeastern Gradute School</strong> ::
<a href="https://www.northeastern.edu/graduate/bio/nikolai-slavov/" target="_blank" >Gradute School Profile</a>
<br>
<strong class="Bold2">Harvard University</strong> ::
<!-- <a href="http://statistics.fas.harvard.edu/people/nikolai-slavov" target="_blank" >Harvard Statistics Profile</a> ::
<a href="https://www.openrev.org/group/quantitative-biology" target="_blank" >OpenRev qBio</a> :: -->
<a href="http://scholar.harvard.edu/nslavov" target="_blank" >Harvard OpenScholar</a> ::
<a href="http://nslavov.rc.fas.harvard.edu/" target="_blank" >Publications</a>
<br>
<strong class="Bold2">Archived data</strong> ::
<a href="https://dspace.mit.edu/discover?scope=%2F&query=Nikolai+Slavov&submit=Go" target="_blank" >DSpace @ MIT</a> ::
<a href="http://genomics-pubs.princeton.edu/" target="_blank" >Supporting Data Websites @ Princeton</a>
<br>
<strong class="Bold2">Science Networks</strong> ::
<a href="http://orcid.org/0000-0003-2035-1820" target="_blank" >ORCID</a> |
<a href="https://www.ncbi.nlm.nih.gov/myncbi/nikolai.slavov.1/cv/212470/" target="_blank" >NCBI</a> |
<a href="https://www.youtube.com/channel/UCWOzbsUtWaAqh9vN-Qh6C6w/featured" >YouTube</a> |
<a href="https://www.researchgate.net/profile/Nikolai_Slavov" target="_blank" >ResearchGate</a> |
<a href="http://openwetware.org/wiki/User:Nikolai_Slavov" target="_blank" >OpenWetWare</a> |
<a href="https://profiles.impactstory.org/u/0000-0003-2035-1820" target="_blank" >Impactstory</a> |
<a href="https://www.scienceopen.com/user/nslavov/biography/" target="_blank" >ScienceOpen</a> |
<a href="https://publons.com/author/331159/nikolai-slavov#profile" target="_blank" >Publons</a> |
<a href="http://www.epistemio.com/nslavov" target="_blank" >Epistemio</a> |
<a href="https://www.mendeley.com/profiles/nikolai-slavov/" target="_blank" >Mendeley</a> |
<a href="https://peerj.com/nslavov/" target="_blank" >PeerJ</a> |
<a href="https://twitter.com/slavovLab" target="_blank" >Twitter</a> |
<a href="http://en.gravatar.com/nnslavov" target="_blank" >Gravitar</a> |
<a href="https://app.dimensions.ai/discover/publication?or_facet_researcher=ur.01030733713.70&order=date" target="_blank" >Dimensions</a> |
<a href="https://singlecellbiology.wordpress.com/" target="_blank" >Single Cell Biology</a> |
<a href="https://disqus.com/home/user/nikolaislavov?utm_source=profile&utm_campaign=bridge" target="_blank" >Disqus</a>
<br><br>
<!--
<h1 class="HeadingStyle">Some of my collaborators</h1>
<ul type="circle">
<li> <a href="http://www.princeton.edu/genomics/botstein/publications/" target="_blank" >David Botstein</a>
<li> <a href="http://web.mit.edu/biophysics/index.html" target="_blank" >Alexander van Oudenaarden</a>
<li> <a href="http://www.people.fas.harvard.edu/~airoldi/" target="_blank" >Edoardo M Airoldi</a>
<li> <a href="https://www.linkedin.com/in/bogbud" target="_blank" >Bogdan Budnik</a>
</ul> -->
</div>
</td>
<tr>
<td class="MenuColTD" align="center"><br>
<h2 class="HeadingStyle" id="ResearchArticles">Societies & Journals</h2>
</td>
<td> <div class="Content" style="line-height: 180%"><br>
<!--<a href="http://www.plos.org/" target="_blank" > PLoS </a> ::
<a href="http://www.plosbiology.org" title="Read PLoS Biology Online" target="_blank" >PLoS Biology</a> ::
<a href="http://www.ploscompbiol.org" title="Read PLoS Computational Biology Online" target="_blank" >PLoS Computational Biology</a> ::
<a href="http://www.plosgenetics.org" title="Read PLoS Genetics Online" target="_blank" >PLoS Genetics</a> ::
<a href="http://www.plosone.org" title="PLoS ONE" target="_blank" >PLoS ONE</a>
<a href="http://www.plosmedicine.org" title="Read PLoS Medicine Online">PLoS Medicine</a>::
<a href="http://www.plospathogens.org" title="Read PLoS Pathogens Online">PLoS Pathogens</a> :: -->
<a href="http://www.nasonline.org/" target="_blank" >NAS</a> ::::
<a href="http://www.pnas.org/" target="_blank" >PNAS</a> ::
<a href="http://www.pnas.org/content/current#PhysicalSciences" target="_blank" >Physical Sciences</a> ::
<a href="http://www.pnas.org/content/current#BiologicalSciences" target="_blank" >Biological Sciences</a>
<!--<br>
<a href="http://www.genetics-gsa.org/pages/conferences.shtml" target="_blank" >GSA</a> ::::
<a href="http://www.g3journal.org/" target="_blank" >G3</a> ::
<a href="http://www.genetics-gsa.org/pages/genetics_journal.shtml" target="_blank" >GENETICS</a> ::
<a href="http://www.genestory.org/publishedVol.html" target="_blank" >Interviews</a> -->
<!-- <br>
<a href="http://www.ascb.org/" target="_blank" >ASCB</a> ::::
<a href="http://www.molbiolcell.org/" target="_blank" >MBoC</a> ::
<a href="http://www.ibiomagazine.org/speakers.html" target="_blank" >iBioMagazine</a> ::
<a href="http://www.youtube.com/user/ibioseminars/videos?view=0" target="_blank" >iBioSeminars</a> ::
<a href="http://www.ascb.org/index.php?option=com_content&view=article&id=172&Itemid=407" target="_blank" >ASCB Newsletters</a>
<br>-->
<br>
<a href="http://www.scimagojr.com/journalsearch.php" target="_blank" >SJR<a/> |
<a href="https://web.northeastern.edu/slavovlab/Journal_Stats/" target="_blank" >Deceptive Numbers</a>
<br>
<a href="http://www.cell.com/cell-reports/home" target="_blank" >Cell Reports</a> |
<a href="http://www.elifesciences.org" target="_blank" >eLife</a> |
<a href="http://msb.embopress.org" target="_blank" >MSB</a> |
<a href="http://www.plos.org" target="_blank" >PLOS</a>
<br>
<a href="http://biorxiv.org" target="_blank" >bioRxiv</a> |
<a href="http://arxiv.org" target="_blank" >arXiv</a>
<!--::
<img src="https://web.northeastern.edu/slavovlab/index_files/bioRxiv.png" width="70" ></img>
<br>
<a href="http://www.gbmsdg.org/" target="_blank" >GBMSDG<a/>
<a href="http://www.biomedcentral.com/" target="_blank" > MBC </a> ::
<a href="http://www.physmathcentral.com/" target="_blank" > PMC </a> ::
<a href="http://www.openrepository.com/" target="_blank" > OR </a> -->
<br><br>
<!--
<h1 class="HeadingStyle" id="IF">Before using the Thomson Impact Factor<sup>®</sup>, consider the underlying data: </h1>
<ul>
<li> The Thomson Corporation boosted the impact factor of current biology by 71% from
<a href="thompson/2002.htm" target="_blank" >2002</a> to <a href="thompson/2003.htm" target="_blank" >2003</a>.
The boost did not require more citations, just a decrease in the number of articles deemed to be "citable" in 2001.
<li> Rossner et al (2007), <a href="http://jcb.rupress.org/content/179/6/1091.full" target="_blank" >Show me the data</a>, JCB vol. 179 no. 6, 1091-1092
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