Health Data Science Center

All

23 repositories

ukb_pgs
Public
A help to construct genetic score in UKB for Andrea Lampis
R
•0•0•3•0•Updated Apr 28, 2025Apr 28, 2025
pqtl_pipeline
Public
snakemake interval harmonization chris gwas-summary-statistics snakemake-pipeline believe
Python
•0•0•0•0•Updated Apr 28, 2025Apr 28, 2025
pqtl_pipeline_finemap
Public
Fine mapping analysis within the pQTL pipeline project
snakemake interval qtl gcta colocalization gwas-summary-statistics snakemake-pipeline cojo coloc
R
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MIT License
•0•0•8•2•Updated Apr 25, 2025Apr 25, 2025
pqtl_annotation
Public
Annotating variants or loci within the pQTL pipeline project
R
•0•0•4•0•Updated Apr 23, 2025Apr 23, 2025
gwasstudio
Public
computational-data-hub
Python
•0•0•6•0•Updated Apr 18, 2025Apr 18, 2025
ds4hb_workshop_t1_1
Public
Jupyter Notebook
•0•0•0•0•Updated Apr 17, 2025Apr 17, 2025
cdh_in_a_box
Public
computational-data-hub
Python
•0•0•0•0•Updated Apr 17, 2025Apr 17, 2025
gwaspipe
Public
computational-data-hub
Python
•2•0•3•0•Updated Apr 16, 2025Apr 16, 2025
sumstats_load_pipeline_in_tiledb
Public
computational-data-hub
Python
•0•0•2•0•Updated Apr 5, 2025Apr 5, 2025
pqtl_downstream
Public
snakemake mapping interval hotspot literature-review mendelian-randomization pqtl snakemake-pipeline
R
•0•0•1•0•Updated Apr 1, 2025Apr 1, 2025
MR_instruments_selection
Public
snakemake interval qtl mendelian-randomization pqtl snakemake-pipeline
R
•0•0•2•0•Updated Mar 4, 2025Mar 4, 2025
Literature_Review_for_Believe
Public
0•0•0•0•Updated Feb 26, 2025Feb 26, 2025
containers
Public
docker docker-container bioinformatics-tool
R
•0•0•0•0•Updated Jan 30, 2025Jan 30, 2025
meta_pipeline
Public
snakemake metal interval meta-analysis chris gwas-summary-statistics snakemake-pipeline
Python
•0•1•0•0•Updated Jan 23, 2025Jan 23, 2025
gwaslab
Public
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
Python
•
GNU General Public License v3.0
•28•0•0•0•Updated Jan 9, 2025Jan 9, 2025
pqtl_locuszoom
Public
Regional association plot of the signals in the pQTL project
qtl pqtl gwas-summary-statistics
Python
•0•0•3•0•Updated Nov 25, 2024Nov 25, 2024
pqtl-believe-interval
Public
Working space for Believe Interval projects analysis
interval pqtl believe
R
•5•2•0•0•Updated Jul 22, 2024Jul 22, 2024
pqtl_ldscore
Public
Python
•0•0•0•0•Updated Jul 3, 2024Jul 3, 2024
tiledb-benchmark
Public
Shell
•0•1•0•0•Updated Jul 3, 2024Jul 3, 2024
SnakeMake_canvas
Public
snakemake snakemake-pipeline
Makefile
•0•0•0•0•Updated Jul 1, 2024Jul 1, 2024
genomics_QC_pipeline
Public
snakemake interval genetic-data snakemake-pipeline imputed
Python
•0•0•0•1•Updated Jul 1, 2024Jul 1, 2024
gwas2vcf
Public
Convert GWAS summary statistics to VCF
Python
•
MIT License
•18•0•0•0•Updated May 11, 2023May 11, 2023
jupyterlab_launcher
Public
Makefile
•0•0•0•0•Updated Mar 16, 2023Mar 16, 2023