Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Mouse orthologs #188

Open
vasikara17 opened this issue Jan 29, 2025 · 0 comments
Open

Mouse orthologs #188

vasikara17 opened this issue Jan 29, 2025 · 0 comments

Comments

@vasikara17
Copy link

Hello,
thanks for the very interesting tool. I am trying to apply the LIANA Orthology Conversion tutorial to my data but unfortunately after running:
ortholog_resource <- generate_homologs(op_resource = op_resource,
target_organism = 10090) # mouse
I get this error:
[2025-01-29 17:03:11] [SUCCESS] [OmnipathR] NCBI HomoloGene (rescued.omnipathdb.org): downloaded 2 records
Error in UseMethod("filter") :
no applicable method for 'filter' applied to an object of class "list"

I have also tried to reinstall the library as suggested in previous closed issues but still it is not working.
Do you have any suggestions on that?

Best regards,
Vasiliki

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant