🚀 # TEST-MODE ...the current REPO does not WORK!!!
Register the Allen Mouse atlas to single histological slice (warps atlas onto slice, cell counting, calculation of cell density for observed region).
🔵 Inspect last changes/updates.
- Allen Mouse template can be downloaded from: https://drive.google.com/drive/u/0/folders/1Bod4JqHYkzvGnBS465xfOti2OF89_lL9
ADVANTAGE: updates can be made via toolbox
- download & install GIT client --> https://git-scm.com/downloads just follow instructions and keep the default properties
- browse to LINK: https://github.com/ChariteExpMri/bart
- select "install_bart.m" and click [RAW]-button or go to here: https://raw.githubusercontent.com/ChariteExpMri/bart/master/install_bart.m
- select "save as" (cmd+s or ctrl+s) and save file as "install_bart.m"
- copy "install_bart.m" to the location where bart should be installed. ..please don't create a folder with name "bart", this folder will be created later on
- set MATLAB's current working dir to the location of "bart"
- type 'bart'
-download "install_bart.m". -save "install_bart.m" at the location where bart should be installed. -in matlab run "install_bart.m"