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@NCI-GDC

Genomic Data Commons

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  1. gdc-workflow-overview gdc-workflow-overview Public

    Overview of GDC Harmonization Workflows

    28 9

  2. gdc-client gdc-client Public

    GDC Data Transfer Tool

    Python 148 41

  3. gdcdatamodel gdcdatamodel Public

    Translation layer between the GDC Data Dictionary and psqlgraph

    Python 28 3

  4. gdcdictionary gdcdictionary Public

    Data dictionary for the GDC

    Python 52 37

  5. psqlgraph psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    Python 22 6

Repositories

Showing 10 of 84 repositories
  • gdc-frontend-framework Public
    NCI-GDC/gdc-frontend-framework’s past year of commit activity
    TypeScript 11 Apache-2.0 0 0 10 Updated Apr 4, 2025
  • fastq_cleaner Public

    FASTQ Vendor Failed Reads Removal

    NCI-GDC/fastq_cleaner’s past year of commit activity
    C++ 0 Apache-2.0 0 1 0 Updated Apr 3, 2025
  • psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    NCI-GDC/psqlgraph’s past year of commit activity
    Python 22 Apache-2.0 6 5 7 Updated Apr 3, 2025
  • variant-filtration-tool Public

    Support tools for the GDC Variant Filtration Workflow

    NCI-GDC/variant-filtration-tool’s past year of commit activity
    Python 1 Apache-2.0 2 0 2 Updated Apr 3, 2025
  • fastqc_db Public
    NCI-GDC/fastqc_db’s past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Apr 1, 2025
  • json-to-sqlite Public
    NCI-GDC/json-to-sqlite’s past year of commit activity
    Makefile 0 Apache-2.0 1 0 1 Updated Apr 1, 2025
  • sesame-cwl Public

    GDC Methylation Array Workflow

    NCI-GDC/sesame-cwl’s past year of commit activity
    Common Workflow Language 1 Apache-2.0 0 0 4 Updated Apr 1, 2025
  • readgroup_json_db Public
    NCI-GDC/readgroup_json_db’s past year of commit activity
    Python 0 Apache-2.0 1 0 4 Updated Mar 31, 2025
  • fastqc_to_json Public
    NCI-GDC/fastqc_to_json’s past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Mar 31, 2025
  • vep-cwl Public

    GDC VEP Variant Annotation Workflow

    NCI-GDC/vep-cwl’s past year of commit activity
    Common Workflow Language 0 Apache-2.0 3 0 2 Updated Mar 25, 2025
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