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19 Open 54 Closed
19 Open 54 Closed
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Issues list

Compatibility with circular DNA
#77 opened Feb 7, 2025 by MJoseMo
interpret circRNA coordinate
#75 opened Jan 20, 2024 by frankligy
Reads per gene vs annotation file generated with CIRCexplorer2
#74 opened Nov 22, 2023 by andre-gabriel-42
Annotation with 0 fusions junctions (STAR alignment)
#73 opened Nov 7, 2023 by andre-gabriel-42
1
Annotation step with STAR data
#72 opened Nov 6, 2023 by andre-gabriel-42
circularRNA_known isoform and exons / outputs information
#71 opened Oct 27, 2023 by npont
IndexError: list index out of range.
#70 opened Aug 23, 2023 by jaberdehghani64
2
Convert paired-end RNA-seq to single-read RNA-seq?
#69 opened Aug 18, 2023 by junjunlab
3
Find circular RNA Fusion from Output of Annotate command
#68 opened Jun 4, 2023 by manjumoorthy95
Mitochondrial circRNAs with CIRCexploere2
#67 opened Apr 17, 2023 by BirongZhang
1
why the CIRCexplorer2 is so slow
#66 opened Mar 18, 2023 by z-bluesky
4
KeyError: '--cuff'
#65 opened Feb 19, 2023 by shelkmike
3
Is CIRCexplorer2 allowing for STAR-generated bam file as input?
#64 opened Jan 24, 2023 by lovebaboon1989
1
want to use circexplorere2 for rat genome (Rnor_6.0)
#63 opened Aug 23, 2022 by sharmi85
1
CIRCexplorer2 parse
#61 opened Jun 20, 2022 by muhammadharoon786
back_spliced_junctions.bed
#59 opened Feb 16, 2022 by ericbrzoska
refFlat file for solanum lycopersicum in the annotating step
#53 opened Feb 25, 2021 by anuiranjan006
1
CIRCexplorer2 parse Converted 0 fusion reads!
#52 opened Feb 18, 2021 by JianGuoZhou3
Export backspliced junctions as separate bam file.
#50 opened Dec 17, 2020 by kopardev
ProTip! Exclude everything labeled bug with -label:bug.