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Research on protein-directed modification and redesign based on artificial intelligence technology.
The research content includes but is not limited to protein structure prediction and optimization, protein-directed modification, and design.

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  1. ProSST ProSST Public

    Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.

    Python 112 9

  2. Pro-FSFP Pro-FSFP Public

    Pro-FSFP: Few-Shot Protein Fitness Prediction

    Python 80 6

  3. VenusFactory VenusFactory Public

    🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers.

    Python 74 9

  4. ProtSSN ProtSSN Public

    🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024).

    Python 62 6

  5. Pro-Prime Pro-Prime Public

    Jupyter Notebook 54 10

  6. VenusREM VenusREM Public

    🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)

    Python 52 8

Repositories

Showing 10 of 13 repositories
  • VenusFactory Public

    🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers.

    ai4protein/VenusFactory’s past year of commit activity
    Python 74 Apache-2.0 9 5 0 Updated Apr 21, 2025
  • .github Public
    ai4protein/.github’s past year of commit activity
    Python 0 0 0 0 Updated Apr 21, 2025
  • ai4protein Public
    ai4protein/ai4protein’s past year of commit activity
    Python 0 0 0 0 Updated Apr 21, 2025
  • VenusREM Public

    🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)

    ai4protein/VenusREM’s past year of commit activity
    Python 52 Apache-2.0 8 7 0 Updated Apr 19, 2025
  • VenusPLM Public

    Versatile Embedding Network for Understanding protein Sequences

    ai4protein/VenusPLM’s past year of commit activity
    Python 18 MIT 1 0 0 Updated Mar 31, 2025
  • CPDiffusion-SS Public

    A Novel Approach for Protein Sequence Design Based on Secondary Strucure

    ai4protein/CPDiffusion-SS’s past year of commit activity
    Python 20 0 0 0 Updated Mar 7, 2025
  • ProSST Public

    Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.

    ai4protein/ProSST’s past year of commit activity
    Python 112 GPL-3.0 9 10 0 Updated Feb 26, 2025
  • ProtSSN Public

    🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024).

    ai4protein/ProtSSN’s past year of commit activity
    Python 62 MIT 6 5 (1 issue needs help) 0 Updated Jan 7, 2025
  • Pro-Prime Public
    ai4protein/Pro-Prime’s past year of commit activity
    Jupyter Notebook 54 MIT 10 8 0 Updated Jan 7, 2025
  • Pro-FSFP Public

    Pro-FSFP: Few-Shot Protein Fitness Prediction

    ai4protein/Pro-FSFP’s past year of commit activity
    Python 80 GPL-3.0 6 7 0 Updated Jan 7, 2025

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