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1. vsearchpipeline vsearchpipeline Public

   VSEARCH pipeline for ASV inference of 16S seq data

   Nextflow 1

2. metagenomicspipeline metagenomicspipeline Public

   shotgun metagenomics pipeline to obtain relative abundances and pathway abundances using biobakery software

   Nextflow 1

3. saltprofiler saltprofiler Public

   Nextflow

4. reportgenerator reportgenerator Public

   Generator of patient microbiome reports

   R

5. rodam rodam Public

   Analyses Pros-RODAM microbiota data

   R

6. transcriptomics-imp-charite transcriptomics-imp-charite Public

   R