Pinned Loading

1. mskcc/vcf2maf mskcc/vcf2maf Public

   Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

   Perl 383 219

2. Build an Azure stack to operate NP-s... Build an Azure stack to operate NP-series VMs on Azure with Dragen's pay-as-you-go (PAYG) license

   1

   ### Purpose

   2

   3

   Build an Azure stack to operate NP-series VMs on Azure with Dragen's pay-as-you-go (PAYG) license

   4

   5

   ### Prerequisites

3. Compare the speed of containerized b... Compare the speed of containerized bwa-mem using various base images

   1

   On a Linux VM or Workstation with `docker` installed, fetch the GRCh38 FASTA, its index, and a pair of FASTQs:

   2

   ```bash

   3

   wget -P /hot/ref https://storage.googleapis.com/genomics-public-data/references/GRCh38_Verily/GRCh38_Verily_v1.genome.fa{,.fai}

   4

   wget -P /hot/reads/test https://storage.googleapis.com/data.cyri.ac/test_L001_R{1,2}_001.fastq.gz

   5

   ```

4. dotfiles dotfiles Public

   My bash dotfiles

   Shell