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@hds-sandbox

Health Data Science Sandbox

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  1. proteomics-sandbox proteomics-sandbox Public

    A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interf…

    Jupyter Notebook 10 2

  2. Intro-NGS-AU_course Intro-NGS-AU_course Public

    Repository for the NGS summer course at Aarhus university

    Jupyter Notebook 8 4

  3. bulk_RNAseq_course bulk_RNAseq_course Public

    Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

    Shell 6 4

  4. scRNASeq_course scRNASeq_course Public

    Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.

    Jupyter Notebook 4 2

  5. AlphaFold_Workshop AlphaFold_Workshop Public

    Predict protein folding structures using ColabFold. Gain a deeper understanding of protein folding prediction with AlphaFold2 and MMseqs2. Run the Jupyter notebook on UCloud, learn to interpret res…

    Jupyter Notebook 3 1

  6. AdvancedSingleCell AdvancedSingleCell Public

    Advanced tutorials for single cell data analysis

    Jupyter Notebook 3

Repositories

Showing 10 of 30 repositories
  • GDKworkshops Public

    Workshops on GenomeDK cluster at Aarhus University: Introduction, pipeline creation with gwf, and more

    hds-sandbox/GDKworkshops’s past year of commit activity
    Shell 0 CC-BY-SA-4.0 1 0 2 Updated Apr 4, 2025
  • HPC-lab Public
    hds-sandbox/HPC-lab’s past year of commit activity
    JavaScript 0 1 0 0 Updated Apr 3, 2025
  • cookiecutter-template Public

    This is a cookiecutter template for data analysis dirs by Sandbox.

    hds-sandbox/cookiecutter-template’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 15 0 0 Updated Apr 3, 2025
  • proteomics-sandbox Public

    A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.

    hds-sandbox/proteomics-sandbox’s past year of commit activity
    Jupyter Notebook 10 CC-BY-SA-4.0 2 0 0 Updated Apr 2, 2025
  • course-template Public template

    A course template for Sandbox courses

    hds-sandbox/course-template’s past year of commit activity
    Jupyter Notebook 1 CC-BY-SA-4.0 2 0 0 Updated Apr 1, 2025
  • GWAS_course Public

    GWAS course material

    hds-sandbox/GWAS_course’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 1, 2025
  • AdvancedSingleCell Public

    Advanced tutorials for single cell data analysis

    hds-sandbox/AdvancedSingleCell’s past year of commit activity
    Jupyter Notebook 3 CC-BY-SA-4.0 0 1 0 Updated Feb 14, 2025
  • Intro-NGS-AU_course Public

    Repository for the NGS summer course at Aarhus university

    hds-sandbox/Intro-NGS-AU_course’s past year of commit activity
    Jupyter Notebook 8 4 0 0 Updated Feb 11, 2025
  • hds-sandbox.github.io Public

    Website for the Health Data Science Sandbox

    hds-sandbox/hds-sandbox.github.io’s past year of commit activity
    HTML 2 3 0 1 Updated Feb 6, 2025
  • bulk_RNAseq_course Public

    Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

    hds-sandbox/bulk_RNAseq_course’s past year of commit activity
    Shell 6 CC-BY-SA-4.0 4 0 0 Updated Jan 29, 2025
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