Code

Feat/cyclic offset#213

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gcorso merged 18 commits intojwohlwend:mainjwohlwend/boltz:mainfrom

UnnaturalProducts:feat/cyclic-offsetUnnaturalProducts/boltz:feat/cyclic-offsetCopy head branch name to clipboard

Apr 26, 2025

Commits

Commits on Feb 5, 2025

• update: Chain type with cyclic flag

  ioannisa92

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  b265085

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• update: documentation for usying cyclic offset

  ioannisa92

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  2197587

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• update: copy array to void reallocate memory error

  ioannisa92

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  5566406

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• update: cyclic mask in token features

  ioannisa92

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  8fe65ee

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• update: cyclic flag in ParsedChain

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  9a97544

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• update: cyclic flag False by default

  ioannisa92

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  0743c2a

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• update: parse cyclic constraint for chain

  ioannisa92

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  29fd2c5

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• update: cyclic flag in TokenData

  ioannisa92

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  606b5d8

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• update: cyclic offset computation

  ioannisa92

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  66ec4f5

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• chore: reorganize options

  ioannisa92

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  806165f

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Commits on Feb 7, 2025

• fix: is_cyclic with non protein inputs

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  jvansan

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  149f22a

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Commits on Feb 8, 2025

• update: guard for cyclic offset on proteins only

  ioannisa92

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  c48c58e

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Commits on Feb 10, 2025

• refactor: explicitly copy array for clarity

  ioannisa92

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  286a936

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• chore:

  ioannisa92

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  aeae7b5

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• update: cyclic on protein check

  ioannisa92

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  6cfed4b

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Commits on Feb 11, 2025

• refactor: cyclic on protein check to run on correct chain

  ioannisa92

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  3a68ccd

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Commits on Mar 21, 2025

• update: makign sure cyclic offset is applied on protein only

  ioannisa92

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  ce8099c

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Commits on Apr 25, 2025

• updates: update schema, enable multiple cyclic polymers, support modified residues

  gcorso

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  e6f300b

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