theofun is a collection of MATLAB functions designed to create theoretical morphospaces from 2D EFA data. Theoretical shapes can then be tested for functional performance, using FEA.
List of functions:
-
taxaSetFromFile: generate taxaSet object from raw data.
-
taxaSet: main class to hold/manipulate raw EFA and taxon datasets.
-
landscape: class that holds x,y and z grid data. Used to generate surface/color map plots
-
meshSpace: class that holds a grid of mesh2D objects across a theoretical morphospace, for generation of performance surfaces
-
pareto: class that holds a 2D pareto dataset, and performs pareto ranking functions
-
Phylogeny: phylogeny class, for plotting (can't be used for any phylogenetic testing)
-
shapespace: theoretical morphospace, with grid of theoretical shapes (objects of class theoShapeN)
-
timeMorph: time-binned morphospace data, used for disparity analyses and visualisation.
-
ele2D (internal class): class to hold element data for 2D meshes
-
mesh2D (internal class): class to hold 2D meshes and perform functional analyses
-
meshList (internal class): list of mesh2D objects, perform bulk functional analyses
-
PhyloNode (internal class): used in construction and functions of Phylogeny objects
-
taxonData (internal class): individual taxon data.
-
theoShapeN (internal class): individual theoretical shape data.
All other functions are internal, and described within.