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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    A Python toolbox for analysing body movements across space and time

    Python 142 43

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 3

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 21 18

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 28 5

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A package to manage electrophysiology analysis.

    Python 19 9

Repositories

Showing 10 of 62 repositories
  • spikewrap Public

    A package to manage electrophysiology analysis.

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 19 BSD-3-Clause 9 18 4 Updated Mar 18, 2025
  • slides-NIU-tea-hour Public

    Slides for the internal SWC tea hour

    neuroinformatics-unit/slides-NIU-tea-hour’s past year of commit activity
    SCSS 1 BSD-3-Clause 0 0 1 Updated Mar 18, 2025
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 1 7 (1 issue needs help) 2 Updated Mar 18, 2025
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    neuroinformatics-unit/datashuttle’s past year of commit activity
    Python 21 BSD-3-Clause 18 44 (1 issue needs help) 13 Updated Mar 18, 2025
  • movement Public

    A Python toolbox for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 142 BSD-3-Clause 43 103 (1 issue needs help) 26 Updated Mar 17, 2025
  • gsoc Public

    A repository for our participation in Google Summer of Code

    neuroinformatics-unit/gsoc’s past year of commit activity
    8 11 0 3 Updated Mar 17, 2025
  • python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    neuroinformatics-unit/python-cookiecutter’s past year of commit activity
    Python 28 BSD-3-Clause 5 14 0 Updated Mar 17, 2025
  • neuroinformatics-unit.github.io Public

    Home website of the Neuroinformatics Unit

    neuroinformatics-unit/neuroinformatics-unit.github.io’s past year of commit activity
    9 BSD-3-Clause 0 16 2 Updated Mar 13, 2025
  • ethology Public

    Data processing tools for animal behavioural analysis

    neuroinformatics-unit/ethology’s past year of commit activity
    Python 16 BSD-3-Clause 9 27 8 Updated Mar 13, 2025
  • dashboard Public Forked from github-community-projects/org-metrics-dashboard

    Overview of all Neuroinformatics Unit repos

    neuroinformatics-unit/dashboard’s past year of commit activity
    TypeScript 1 MIT 26 1 0 Updated Mar 13, 2025
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