Repositories list

• dds_web

  Public
  A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

  pythonflask

  Python

  •

  Other

  •8•8•0•5•Updated Apr 25, 2025Apr 25, 2025

• genome-portal

  Public
  This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden

  Python

  •

  MIT License

  •0•0•0•6•Updated Apr 25, 2025Apr 25, 2025

• dds_cli

  Public
  The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

  clickpythoncommand-line

  Python

  •

  MIT License

  •11•9•3•5•Updated Apr 25, 2025Apr 25, 2025

• pathogens-portal

  Public
  Swedish pathogens portal

  bootstrapmarkdownhugo+ 1covid-19

  HTML

  •

  MIT License

  •28•13•0•0•Updated Apr 25, 2025Apr 25, 2025

• data.scilifelab.se

  Public
  SciLifeLab Data Platform

  HTML

  •

  MIT License

  •5•2•0•3•Updated Apr 24, 2025Apr 24, 2025

• serve

  Public
  SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.

  JavaScript

  •

  Apache License 2.0

  •1•10•0•2•Updated Apr 24, 2025Apr 24, 2025

• serve-charts

  Public
  SciLifeLab Serve charts repository

  HTML

  •

  Other

  •1•1•0•2•Updated Apr 24, 2025Apr 24, 2025

• form-manager

  Public
  A simple system for receiving form submissions.

  pythonflaskmongodb+ 2vuequasar-framework

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•4•3•Updated Apr 22, 2025Apr 22, 2025

• precision-medicine-portal-frontend

  Public
  React project for the frontend of the Precision Medicine Portal by DC Data Science Node

  TypeScript

  •

  Other

  •0•2•0•0•Updated Apr 22, 2025Apr 22, 2025

• RDM-guidelines

  Public
  This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

  HTML

  •

  Other

  •4•5•21•0•Updated Apr 22, 2025Apr 22, 2025

• pathogens-portal-scripts

  Public
  This repository holds the scripts produced for the Swedish Pathogens Portal

  Python

  •

  MIT License

  •0•1•0•1•Updated Apr 17, 2025Apr 17, 2025

• covid-sample-collection-database

  Public
  The Swedish COVID-19 Sample Collection Database, part of the COVID-19 Data Portal Sweden

  HTML

  •

  MIT License

  •1•0•0•0•Updated Apr 9, 2025Apr 9, 2025

• scilifelab-metadata-templates

  Public
  This repository stores metadata templates in use at SciLifeLab, organized according to data type.

  Python

  •

  MIT License

  •0•1•6•1•Updated Apr 9, 2025Apr 9, 2025

• DIGIfor1Health_web

  Public
  Liquid

  •

  MIT License

  •0•0•4•0•Updated Apr 7, 2025Apr 7, 2025

• dc-dynamic

  Public
  Scripts related to Freya applications and Slack

  Python

  •1•2•0•0•Updated Apr 3, 2025Apr 3, 2025

• Anubis

  Public
  Proposal submission and review handling system.

  Python

  •

  MIT License

  •2•2•3•8•Updated Mar 28, 2025Mar 28, 2025

• serve-images

  Public
  All files related to images used in Serve

  Python

  •1•1•2•0•Updated Mar 27, 2025Mar 27, 2025

• node-pathogens-portal-demo

  Public
  A repo to have deployment related stuff for node-pathogens-portal demo site

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

• node-pathogens-portal

  Public
  A minimal/example hugo site for node pathogens portal. Checkout the demo site following the URL below

  MIT License

  •0•1•0•0•Updated Mar 27, 2025Mar 27, 2025

• node-pathogens-portal-theme

  Public
  Hugo theme for pathogens portal

  HTML

  •

  MIT License

  •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

• dsw-appendix

  Public
  A static site which provides extra documentation for users of the main DSW system

  CSS

  •

  Other

  •1•1•0•0•Updated Mar 26, 2025Mar 26, 2025

• Annual_report_Bibliometry

  Public
  This is where the bibliometrics scripts for the annual report will be held. The intention will be to have a folder dedicated to scripts from each year if need be. However, the scripts should be standardised as much as possible for use in each year

  Python

  •

  MIT License

  •0•2•0•0•Updated Mar 24, 2025Mar 24, 2025

• Publications

  Public
  A web-based publications reference database system.

  Python

  •

  MIT License

  •3•10•9•7•Updated Mar 20, 2025Mar 20, 2025

• gradio-flower-classification

  Public
  Web app that allows users to input an image of a flower and get a prediction on what type of flower it is from a machine learning model.

  Python

  •

  MIT License

  •1•1•0•0•Updated Mar 20, 2025Mar 20, 2025

• serve-tutorials

  Public
  Tutorials for running applications on Scilifelab Serve.

  Jupyter Notebook

  •

  MIT License

  •1•6•0•0•Updated Mar 20, 2025Mar 20, 2025

• serve-load-testing

  Public
  Load testing for SciLifeLab Serve using the Python Locust library.

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

• serve-event-listener

  Public
  This repository contains the code for the serve event listener functionality

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

• omero-workshops

  Public
  Workshop material related to SciLifeLab OMERO

  Jupyter Notebook

  •

  Other

  •0•1•0•0•Updated Mar 19, 2025Mar 19, 2025

• precision-medicine-portal-backend

  Public
  Python

  •

  MIT License

  •0•4•0•0•Updated Mar 12, 2025Mar 12, 2025

• blobserver

  Public
  Simple web app to server blobs (files containing any data) publicly. A file can be uploaded or updated by an authorized account, either via the web interface or via a script.

  Python

  •

  MIT License

  •0•2•0•7•Updated Feb 20, 2025Feb 20, 2025