UCL Bioinformatics Group

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49 repositories

ansible_rocky
Public
new, united ansible repo for rocky machines
Shell
•0•0•0•0•Updated Mar 25, 2025Mar 25, 2025
memsat-svm-pore
Public
The version of memsat-svm that also predicts pore lining residues
Perl
•0•0•0•0•Updated Mar 25, 2025Mar 25, 2025
psipred_react
Public
A react port of the psipred_webserver dynamic pages
JavaScript
•0•1•1•0•Updated Mar 24, 2025Mar 24, 2025
DMPmetal
Public
repository for the DMPmetal metal binding site predictor
Python
•0•0•0•0•Updated Mar 20, 2025Mar 20, 2025
ted-tools
Public
ML toolset for creating TED: The Encyclopedia of Domains
Python
•
MIT License
•4•16•1•0•Updated Mar 19, 2025Mar 19, 2025
GsRCL
Public
repository for the GsRCL cell type identifier
Python
•0•0•0•0•Updated Mar 18, 2025Mar 18, 2025
merizo_search
Public
Fast protein domain structure embedding+search tool
Python
•
GNU General Public License v3.0
•3•14•0•0•Updated Mar 17, 2025Mar 17, 2025
blast_cache
Public
PSIBLAST and BLAST cache
devops blast blast-cache
Python
•
GNU General Public License v3.0
•0•0•3•3•Updated Feb 27, 2025Feb 27, 2025
mempack
Public
Membrane alpha helix packing and orientation predicrtor
helix-packing membrane-proteins
Perl
•
Other
•1•1•0•0•Updated Feb 18, 2025Feb 18, 2025
cgdms
Public
Differentiable molecular simulation of proteins with a coarse-grained potential
automatic-differentiation protein force-field potential coarse-grained
Python
•
MIT License
•4•55•0•0•Updated Feb 6, 2025Feb 6, 2025
DMPfold2
Public
Fast and accurate protein structure prediction
deep-learning end-to-end multiple-sequence-alignment protein-structure-prediction
Python
•
GNU General Public License v3.0
•12•51•1•1•Updated Jan 17, 2025Jan 17, 2025
profile_drift_new
Public
update for profile drift project
Python
•0•0•0•0•Updated Dec 17, 2024Dec 17, 2024
psipred_branding
Public
contains all our branding files, logos and info
0•0•0•0•Updated Dec 3, 2024Dec 3, 2024
Merizo
Public
Fast and accurate protein domain segmentation using Invariant Point Attention
Python
•
GNU General Public License v3.0
•7•34•1•0•Updated Nov 27, 2024Nov 27, 2024
hspred
Public
Protein-protein interaction hotspot predictor
proteins protein-structure hotspot-prediciton
Perl
•
Other
•0•2•0•0•Updated Nov 27, 2024Nov 27, 2024
MemEmbed
Public
Membrane protein orientation using knowledge-bases potentials
membrane-protiens membrane-orientation
C++
•
Other
•0•1•0•0•Updated Nov 27, 2024Nov 27, 2024
metsite
Public
Metal ion ligand contact predictor
prototype metal-binding-prediction
C++
•
Other
•1•1•0•0•Updated Nov 27, 2024Nov 27, 2024
dompred
Public
Protein sequence domain predictor
protein-structure protein-domains
Perl
•
GNU General Public License v3.0
•0•1•0•0•Updated Nov 25, 2024Nov 25, 2024
s4pred
Public
A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
Python
•
GNU General Public License v3.0
•9•53•2•0•Updated Nov 25, 2024Nov 25, 2024
pGenTHREADER
Public
Protein fold recognition using strucutal and sequence template threading
protein fold-recognition
C
•
Other
•2•5•1•0•Updated Nov 25, 2024Nov 25, 2024
disopred
Public
Protein structural disorder prediction
proteins disorder-prediction
C++
•
Other
•8•18•2•0•Updated Nov 21, 2024Nov 21, 2024
MemSatSVM
Public
Membrane helix prediction with SVMs
membrane-proteins membrane-helix-predicion membrane-topology
Perl
•
Other
•2•1•0•0•Updated Nov 21, 2024Nov 21, 2024
psipred
Public
PSIPRED Protein Secondary Structure Predictor
proteins secondary-structure-prediction
Java
•
Other
•12•53•0•1•Updated Nov 21, 2024Nov 21, 2024
analytics_automated
Public
Middleware layer for exposing analytics and distributed computing jobs as web services
Python
•
Other
•4•0•0•0•Updated Aug 18, 2024Aug 18, 2024
p53_docking
Public
Project code for Chris Morris collab
Python
•0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
webserver_test_dbs
Public
A really tiny slice of the top of a late 2015 uniref90 release, plust BLAST db formatting
0•0•0•0•Updated Jun 12, 2024Jun 12, 2024
web_server_scripts
Public
Web server helper scripts
Python
•0•0•0•0•Updated Apr 17, 2024Apr 17, 2024
biod3
Public
Protein annotation web graphics lib
d3 protein-annotation
JavaScript
•0•0•0•0•Updated Feb 22, 2024Feb 22, 2024
ansible_production_config
Public archive
Production version of our ansible config, which also loses all the extraneous waffle
Perl
•0•0•1•1•Updated Feb 12, 2024Feb 12, 2024
ansible_config
Public archive
PSIPRED server architecture ansible config and playbooks
devops web-server
Shell
•0•0•0•0•Updated Feb 12, 2024Feb 12, 2024