There are open questions about how best to structure this package that we can address (i.e. do we do multiple modules within this module, 1 single module, etc).
The nsaph_utils package is intended to hold python code that will be useful across multiple portions of the NSAPH pipelines.
The included utilities are developed to be as independent of specific infrastructure and execution environment as possible.
Included utilities:
- Interpolation code
- Reading FST files from Python
- various I/O wrappers
- An API and CLI framework
- QC Framework
- Documentation utilities to simplify creation of consistent documentation for NSAPH platform
Updated 2/26/2021, Ben Sabath
- Interpolatation code: We have re-implemented the logic used for the initial moving average interpolation used in the R based pipelines. Developing better metholdologies remains to be done. Based on spot checks the results match those from the previous version.
Updated 2/26/2021, Ben Sabath
- Generic
Dataobject that other NSAPH modules can inherit from. - Creation of list of other useful general features
- Review of already done development to see what would make sense to port to this package