v1.7.2

Fixes the NCBI dataset zip loading behavior to avoid that the progress dialog appears before a zip file is selected.

v1.7.1

Fixes the NCBI dataset zip loading behavior to avoid that the progress dialog is still shown when no file is selected.

v1.7.0

SEDA v1.7.0 release. This version adds support from loading NCBI dataset zip files.

v1.6.1

Fixes the NCBI Rename operation to work with the new "Datasets" web interface.

1.6.0

SEDA v1.6.0 release. This release:

• Adds a Command-Line Interface (CLI) for all operations.
• Includes new distributions for APT (Advanced Package Tool), used in Debian-based distributions like Ubuntu or Kubuntu, RPM (Red Hat Package Manager), used in Fedora or CentOS, among others, and Snap.
• Fixes a bug when filtering by reference sequence size difference from an external file.

In addition, the SEDA pipelines with Compi project provides a framework for easily creating pipelines made up of SEDA commands using Compi.

v1.5.1

• Fixes the PfamScan operation that was not working due to changes in the web service.
• Fixes a bug in the PfamScan operation that was causing the expectation value was not submitted in the query.

v1.5.0

SEDA v1.5.0 release. This release adds support for running the CGA (Conserved Genome Annotation) Pipeline as a new Gene annotation operation.

v1.4.0

SEDA v1.4.0 release. This release fixes the Splign/Compart protocol to properly retrieve the FASTA sequences from the Splign/Compart annotations. So far, we were creating a bidirectional genome (the original genome plus its reverse-complement) but we realized that Splign/Compart is able to annotate in both strands and therefore such bidirectional genome is no longer needed. After removing this, the way that the FASTA sequences are extracted from the annotations varies depending on the query/subject start/end coordinates. This is described in the corresponding section of the manual.

v1.3.2

Fixes a bug when running BLAST operations using Docker. The bug was only affecting to BLAST commands execution in Docker that require protein databases (e.g. blastp) and use an alias (i.e. "query against all databases" was used).

v1.3.1

This release fixes an important bug in the ProSplign/ProCompart pipeline. The tblastn output must be sorted by subject and query and so far it was not being sorted properly. This commit fixes this behavior and now the output is sorted properly by subject and query as the procompart tool requires.