qualimap

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Pipeline for automated genomic variant analysis in inherited diseases, integrating alignment, variant calling, and quality control

bioinformatics pipeline genomics ngs computational-biology vcf multiqc variant-calling genetic-analysis bedtools samtools bowtie2 fastqc freebayes qualimap

Report summary statistics relating to quality of bam files with Nextflow

bioinformatics genomics nextflow ngs alignment multiqc sambamba bam samtools qualimap mosdepth australian-biocommons

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