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root-mean-square-deviation

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GiatrasKon / Algorithms-in-Structural-Bioinformatics-Assignments

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Assignments from the 'Algorithms in Structural Bioinformatics' graduate course, exploring RNA folding, molecular conformational analysis, and protein structure comparison using Python and bioinformatics tools.

python bioinformatics structural-biology jupyter-notebook computational-biology biopython pymol conformational-analysis structural-bioinformatics rna-folding rmsd root-mean-square-deviation protein-structure-analysis sars-cov-2 chimerax alphafold2 serotonin structure-visualization crude-energy-minimization secondary-structure-elements
  • Updated Dec 3, 2024
  • Jupyter Notebook

GiatrasKon / ProteinStructurePrediction-ComparativeStudy

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Comparison of protein structure prediction methods: Rosetta Ab Initio, which uses fragment assembly, Monte Carlo optimization and energy minimization, and a Linear Algebra Algorithm based on Cayley-Menger matrices.

python bioinformatics monte-carlo matlab protein-data-bank linear-algebra computational-biology rosetta structural-bioinformatics singular-value-decomposition nmr-data protein-folding energy-minimization abinitio-simulations root-mean-square-deviation fragment-assembly protein-structure-prediction comparative-study rosetta-abinitio cayley-menger
  • Updated Dec 3, 2024
  • Jupyter Notebook

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